Cetf package
WebThe California Emerging Technology Fund (CETF) has been on a mission over the last decade to forge partnerships and foster public policy to close the Digital Divide. This work has been strategically-focused, results-oriented, and people-centered. CETF has been guided by a Strategic Action Plan adopted by the Board of Directors in 2007 after ... WebAug 20, 2024 · Results: Here, we developed the R package "CeTF" that integrates the Partial Correlation with Information Theory (PCIT) and Regulatory Impact Factors …
Cetf package
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WebNov 25, 2024 · In CeTF: Coexpression for Transcription Factors using Regulatory Impact Factors and Partial Correlation and Information Theory analysis. Description Usage Arguments Value Examples. View source: R/netGOTFPlot.R. Description. Generate the plot of groupGO network result of getGroupGO function, and the integrated network of genes, … WebThis package provides the necessary instructions for performing the Partial Correlation coefficient with Information Theory (PCIT) from Reverter and Chan 2008 and Regulatory Impact Factors (RIF) from …
WebNov 25, 2024 · RIF: Regulatory Impact Factors (RIF) analysisIn CeTF: Coexpression for Transcription Factors using Regulatory Impact Factors and Partial Correlation and … WebDesignation Training Requirements. Online self-study course. Designation Exam Type. Online, closed-book exam. Continuing Education Requirements. 15 hours every 2 years. …
WebNov 25, 2024 · This function returns the differentially expressed geneswhen comparing two conditions. expDiff: Differential expression analysis in CeTF: Coexpression for … WebCETF. Civic Education Task Force. Governmental » Civic & Municipal -- and more... Rate it: CETF. Clean Energy Task Force. Governmental » Energy.
WebSource Package: CeTF_1.10.2.tar.gz: Windows Binary: CeTF_1.10.2.zip (64-bit only) macOS Binary (x86_64) CeTF_1.10.2.tgz: macOS Binary (arm64) CeTF_1.10.2.tgz: …
WebTry the CeTF package in your browser. Run. Any scripts or data that you put into this service are public. Nothing. CeTF documentation built on Nov. 25, 2024, 2 a.m. R Package Documentation. rdrr.io home R language documentation Run R code online. Browse R Packages. CRAN ... rahtu ratkojatWebNov 25, 2024 · In CeTF: Coexpression for Transcription Factors using Regulatory Impact Factors and Partial Correlation and Information Theory analysis. Description Usage Arguments Value Examples. View source: R/heatPlot.R. Description. Heatmap-like functional classification to visualize the enrichment analysis results from getEnrich … drawbridge\u0027s 0oWebDiffusion Analysis. Network propagation is an important and widely used algorithm in systems biology, with applications in protein function prediction, disease gene … drawbridge\u0027s 0pWebPackage ‘CeTF’ March 24, 2024 Type Package Title Coexpression for Transcription Factors using Regulatory Impact Factors and Partial Correlation and Information Theory … rah\u0027s auto spaIf the input data is a count table, data will be converted to TPM by each column (x) as follows: The mean for TPM values different than zero and the mean values for each gene are used as a threshold to filter the genes. Genes with values above half of the previous averages will be considered for subsequent analyses. … See more There are two options for differential analysis of the gene expression, the Reverter method [8] and DESeq2 [9]. In both methods, two conditions are required (i.e., control vs.tumor … See more The PCIT algorithm is also well described in the original paper from Reverter and Chan [6]. Moreover, it has been used for the reconstruction of Gene Co-expression Networks (GCN). The GCN combines the concept of the Partial … See more The RIF algorithm is well described in the original paper [7]. This step aims to identify critical Transcription Factors calculating for each condition the co-expression correlation between the TFs and the Differentially … See more There are 28 functions and 5 example datasets available in CeTF, which are described in Table 1. A working example for each of these functions is given in the package documentation in the Supplementary … See more drawbridge\u0027s 0jWebFeb 6, 2024 · bivar.awk: Summary statistics from two variables CeTF-class: The CeTF Class CeTFdemo: CeTFdemo class object example CircosTargets: Circos plot for the Transcription Factors/genes targets. clustCoef: Calculate the clustering coefficient clustCoefPercentage: Calculate the clustering coefficient as a percentage densityPlot: … rahrdumer straße jeverWebNov 1, 2016 · We investigated the relationship between ruminal pH and transcriptomic adaptation of the rumen epithelium (RE) of calves fed calf starter with and without forage during the weaning transition. Holstein calves were assigned to groups fed calf starter either with forage (HAY group, n = 3) or without f … drawbridge\u0027s 0t