WebJan 23, 2024 · In genefilter: genefilter: methods for filtering genes from high-throughput experiments. Description Usage Arguments Author(s) Examples. View source: R/filter_volcano.R. Description. Generate a volcano plot contrasting p-value with fold change (on the log scale), in order to visualize the effect of filtering on overall variance … WebJan 23, 2024 · filter_volcano: Volcano plot for overall variance filtering; findLargest: Find the Entrez Gene ID corresponding to the largest... gapFilter: A filter to select genes based …

Anova: A filter function for Analysis of Variance in genefilter ...

WebJan 23, 2024 · Anova: A filter function for Analysis of Variance coxfilter: A filter function for univariate Cox regression. cv: A filter function for the coefficient of variation. dist2: Calculate an n-by-n matrix by applying a function to all... eSetFilter: A function to filter an eSet object filtered_p: Compute and adjust p-values, with filtering filterfun: Creates a first FALSE … WebJan 23, 2024 · A set of filters may be selected to filter genes in through each of the filters in the order the filters have been selected Value A logical vector of length equal to the number of rows of 'expr'. The values in that vector indicate whether the corresponding row of 'expr' passed the set of filter functions. Author (s) Jianhua Zhang See Also thornscrub hook-nosed snake

Genefilter — bioconductor v3.9.0 - Homolog.us

WebJul 13, 2024 · IQR is a reasonable variance-filter choice when the dataset is split into two roughly equal and relatively homogeneous phenotype groups. If your dataset has important groups smaller than 25% of the overall sample size, or if you are interested in unusual individual-level patterns, then IQR may not be sensitive enough for your needs. Webgenefilter: A function to filter genes. genefinder: Finds genes that have similar patterns of expression. genescale: Scales a matrix or vector. half.range.mode: Mode estimation for continuous data kappa_p: Compute proportionality constant for fold change bound. kOverA: A filter function for k elements larger than A. WebrowSds {genefilter} R Documentation Row variance and standard deviation of a numeric array Description Row variance and standard deviation of a numeric array Usage … thornscrub plants